Ok, I didn't know that the end of the pinion itself wasn't milled. I assume then that the pinion layshaft has a shoulder milled on it, that the bearing rides against, so that measuring against the bearing shoulder is essentially the same thing.
With all that said, from the best I can tell, the bearing retainer for the pinion bearing is inside the transmission case. So I can remove the layshaft without disturbing the ring gear, correct? In other words, I only have one thing to be concerned with upon re-assembly and that is getting the correct protrusion of the pinion bearing, in order to get the same mesh.
Thanks,
Tom